AI-Powered Lab Platforms: From Data Overload to Data Fluency
Whitepaper
Published: June 16, 2025

Credit: iStock
Globally, scientific labs generate unprecedented volumes of data through cloud-based platforms, yet most of this valuable information remains fragmented and buried across different systems.
While traditional software-as-a-service (SaaS) solutions have addressed the accessibility problem, labs still struggle with data overload, forcing scientists to spend countless hours searching for information that should be readily available.
This whitepaper presents AI-powered SaaS, the next advancement in lab informatics that is transforming how lab workers interact with their data, enabling natural language conversations that deliver contextualized insights exactly when needed.
Download this whitepaper to discover a tool that:
- Is revolutionizing laboratory workflows
- Eliminates repetitive tasks while surfacing contextualized insights
- Enhance compliance and traceability in scientific research
Beyond SaaS | 1
In labs around the world, scientific teams are applying the software-as-aservice model to generate more data than ever before. And while that data
has enormous potential to drive innovation, it’s highly fragmented—created
by different instruments, stored in different systems, and interpreted through
different points of view.
For years, labs have responded to this challenge by centralizing their data. Add
another system. Build another data lake. But whether your lab data is spread
across ten systems or gathered in a big central location, it’s not usable if it’s not
contextualized. That’s where Lab 4.0 comes in, bringing with it the promise
of digital transformation as a gateway to better, faster decisions. Centralizing
data is no longer enough—today, labs seek to transform that data into smart,
contextualized, and actionable insights.
At the heart of this evolution are two key innovations. First, there’s the extension of software-as-a-service into its next generation: service-as-a-software,
or what we call SaaS 2.0. Then there’s the emergence of agentic AI, which
harnesses contextual awareness and scientific domain expertise to understand
what users need, even when users themselves aren’t sure.
These innovations add up to more than a product update. They’re enabling a
whole new philosophy for how work gets done in the lab. It’s about putting
lab workers directly in conversation with their data, ensuring they get a meaningful, contextualized response—not after days of hands-on analysis, but in the
moment, right when it’s needed.
This evolution won’t start with a big bang. It’s a journey made up of small,
high-impact changes: one repetitive task eliminated, one key insight surfaced,
one workflow simplified. At LabVantage, we’re committed to making that
journey with our customers, helping every lab become a lab of the future one
step at a time.
— Mikael Hagstroem
CEO, LabVantage Solutions Inc.
This evolution won’t start
with a big bang. It’s a
journey made up of small,
high-impact changes:
one repetitive task
eliminated, one key insight
surfaced, one workflow
simplified.
At LabVantage, we’re
committed to making that
journey with our customers,
helping every lab become a
lab of the future, one step at
a time.
— Mikael Hagstroem
CEO, LabVantage
Solutions Inc.
Beyond SaaS: How Service-as-a-Software
and Agentic AI Are Powering Labs of the Future
Beyond SaaS | 2
THE EVOLUTION OF LABORATORY INFORMATICS
SaaS 1.0: A Necessary First Step
For labs, the first wave of SaaS was revolutionary. On-premise systems gave way to new,
cloud-based LIMS platforms offering more flexibility, lower maintenance costs, and improved
scalability. No more making do with outdated legacy systems—now labs could access the
latest features without a costly upgrade. No more extensive data entry—now labs could count
on fast, reliable results without bottlenecks and time-consuming manual tasks. And no more
disconnected teams—with a cloud-based platform, labs could collaborate with other areas,
like manufacturing, in real time.
But with this shift to SaaS 1.0 came new challenges. The volume and variety of data
generated in the lab grew exponentially, creating a deluge of analytical outputs, instrument
data, sample logs, QC records, and more—much of it trapped in organizational silos, making
it difficult to access, analyze, and put to use.
Data lakes emerged as a potential solution, but aggregating siloed data in a centralized
location only solved half of the problem.
Managing and contextualizing large volumes of data isn’t typically a core competency for
scientists. They’re trained to generate insights—not to wrangle spreadsheets, navigate siloed
systems, or piece together incomplete data sets. But without those steps, lab workers are
repeating completed tasks, missing key test steps, and wasting hours hunting for information
that should have been at their fingertips. These inefficiencies stem not just from data overload,
but from the unusability of that data. And they don’t just slow innovation—they introduce risk,
lower reproducibility, and drain resources. To solve these challenges, what labs needed wasn’t
a replacement for SaaS 1.0—they needed its natural evolution. Enter SaaS 2.0, designed not
only to centralize data but to understand it, connect it, and make it work for science.
From Data Access to Data Fluency
The core SaaS 1.0 concept of software-as-a-service gave labs a flexible, cloud-enabled
platform. By enriching that platform with agentic AI, SaaS 2.0 evolves that dynamic into
service-as-a-software. Agentic AI allows lab workers to interact with intelligent agents
in natural language. The “service” in service-as-a-software is what happens next: Those AI
agents respond to conversational prompts, understand lab workflows, initiate tasks, and
surface contextualized data exactly when it’s needed.
These embedded AI agents aren’t just chatbots or analytical tools. They’re digital coworkers
with extensive, domain-specific training that’s grounded in company and lab data. They’re the
gateway to less friction in lab workflows, and more innovation—and they’re fundamentally
changing and accelerating the way science gets done.
THE “SERVICE” IN
SOFTWARE-AS-A-SERVICE
Agentic AI allows lab workers to
interact with intelligent agents in
natural language. The “service” in
service-as-a-software is what happens
next: Those AI agents respond to
conversational prompts, understand
lab workflows, initiate tasks, and
surface contextualized data exactly
when it’s needed.
Beyond SaaS | 3
Traditional SaaS and SaaS 2.0: A Comparison
Software-as-a-Service
(Traditional SaaS)
Service-as-a-Software
(SaaS 2.0)
Core philosophy Cloud-delivered software
AI-driven services that
enable lab workers to talk
to their data
What users can expect Manual software operation AI agents that respond to
natural language prompts
Workflow design Standardized Personalized and adaptive
Intelligence Limited automation
Context-aware AI that
understands scientific
workflows and user intent
Interoperability Prone to siloed operations Built for interoperability and
API integration
Data handling Basic reports Predictive and domainspecific analytics
Glossary of Terms
SaaS 2.0: SaaS 2.0 leverages a “service-as-a-software” philosophy, enabling lab workers to
“talk to their data” via AI agents who respond with contextualized, actional insights.
Semantic Framework: A semantic framework is a structured, ontology-based system that
contextualizes lab data, enabling AI agents to interpret and adapt to scientific environments
and provide insightful, accurate information to lab workers.
Agentic AI: Agentic AI refers to intelligent, domain-trained agents that understand lab
workflows, respond to natural language, and function like digital coworkers to support
scientific tasks in real time.
Digital Workforce: This term refers to the AI agents embedded in SaaS 2.0 platforms.
These digital collaborators are trained to handle repetitive tasks, surface valuable insights,
and accelerate research by working alongside scientists.
Beyond SaaS | 4
The SaaS 2.0 Philosophy in Practice
Human-centered by design
What does it mean, practically speaking, to move from data access to data fluency?
It means adopting a digital interface that’s designed for the way people really work inside a
lab. There may be people with different workflows, different preferences, and different levels
of technical proficiency, but they share a need: to get context-rich answers to their most
pressing scientific questions, grounded in lab data and ready for fast, effective application at
the bench.
In other words, lab workers need a way to talk to their data. Not as data scientists writing
SQL queries or deciphering complex visualizations, but as people speaking naturally, like you
would with a coworker who understands your language, context, and goals. That’s exactly
how the intelligent agents powering SaaS 2.0 are designed: as coworkers and collaborators.
Alongside people in the lab, they can interpret intent, apply lab-specific logic, and surface
answers instantly. They free teams to focus on science, not software.
The interactions between lab workers and their digital coworkers don’t stop with the first
question. Because these AI agents work within a semantic framework, they can handle
follow-up inquiries, observe and adapt to evolving workflows, and refine their responses in
real time as users’ needs or goals evolve.
Built for the unique challenges of lab work
This shift to SaaS 2.0 and a digital workforce only works if that workforce is grounded in truth.
There’s no room for AI-driven hallucinations or traceability issues. That’s why the data fabric
underpinning SaaS 2.0 is so important, especially in the highly regulated lab environment.
The key is to govern AI agents using rigorous data ontologies. That means developing
structured, domain-focused guardrails to define how data relates to lab workflows. Using
these ontologies, AI agents can build their contextual understanding and apply lab-specific
logic to deliver accurate and traceable insights. That means:
• Reliable results, not hallucinations: By grounding SaaS 2.0 agents in verified internal data,
the risk of encountering a fabricated or misleading response diminishes.
• Built-in traceability: Instead of relying on probabilistic “bets,” lab-specific AI agents offer
proven data pedigrees to back up critical insights.
• Deep domain expertise: AI agents grounded in lab ontologies can offer the contextual
fluency necessary to function in a technical and highly regulated environment.
“When developing SaaS 2.0 solutions,
the focus is often on building the AI agent
itself, when instead it should be on the
connective tissue—linking the agent to
data it can trust.”
— Mikael Hagstroem
CEO, LabVantage
Solutions Inc.
Real-world Results: Three Ways That SaaS 2.0
Will Transform Lab Work
1. Smarter searches and deeper insights
Until now, navigating petabytes of data from large-molecule studies or reviewing results
across multiple sites has been a colossal task, driven by keyword queries and involving hours
of hands-on technical work.
The concept of “talking to your data,” a core innovation of SaaS 2.0, changes all of that.
Using domain-specific large language models (LLMs) refined for lab environments, AI agents
can quickly extract relevant knowledge in response to a conversational query from a lab
worker. This will dramatically accelerate the process of identifying promising compounds,
predicting test outcomes, analyzing supply chain dynamics, and completing other high-value
lab objectives.
Beyond SaaS | 5
AI Agent in Action
Lab worker: “Have we run stability tests on any compound similar to molecule
1234 in the past 6 months?”
AI agent:“Yes, stability tests were completed for molecules 4514, 8515, and
1451, each sharing >90% similarity. Here are the summarized results and any
deviations noted.”
This kind of real-time assistance helps reduce unnecessary effort, saving
valuable time and materials.
AI Agent in Action
Lab worker: “Are there any studies out there relevant to this gene variation and
sample type?”
AI agent: “I found six relevant studies published within the last 18 months.
Would you like me to summarize their conclusions?”
As if tagging relevant data with the digital equivalent of a sticky note,
AI agents can retrieve meaningful, contextually matched insights—even
from external sources.
2. AI-powered automation, personalized for labs
Reducing operational overhead is one of the most immediate returns on an investment
in the SaaS 2.0 evolution. AI agents can proactively assess lab activities to flag
redundancies, identify gaps, and integrate into personalized workflows. This isn’t about
replacing lab workers—it’s about freeing them to focus on higher-value scientific work,
while a trusted digital coworker handles the repetitive, time-consuming tasks that used
to inhibit forward progress.
Beyond SaaS | 6
AI Agent in Action
Lab worker: “Add Sample #4378 to this run.”
AI agent: “Just so you know, you’ve already run this sample. It was tested last
week under the same protocol.”
Proactive alerts reduce duplicate testing, potentially saving hours—or
even days—across busy labs.
AI Agent in Action
Lab worker: “Finalizing this submission.”
AI agent: “Reminder: You haven’t added the stability test that’s typically required
for this workflow. Would you like to include it now?
Because it understands the procedures unique to a specific lab or
workflow, the digital coworker can prevent missed steps that could delay
results or trigger costly rework.
3. Compliance that labs can trust
Regulatory expectations are continuously evolving, often in the direction of more
stringent oversight—particularly in this age of AI. That increases the pressure on labs to
prove the pedigree of compliance-related data. Where did it come from? What method
was used to generate it? What is its full lineage?
Probabilistic methods that rely on pattern recognition to answer these questions won’t
stand up to the scrutiny of a regulator, which is why SaaS 2.0 is built on semantic
ontologies that enable data centricity. That means every result is traceable back to its
source. And because the AI driving SaaS 2.0 is grounded in verifiable internal data
and lab-specific logic, it can dynamically evolve in lockstep with shifting compliance
requirements.
Beyond SaaS | 7
AI Agent in Action
Lab worker: “Where did this test result come from?”
AI agent: “This result is from sample #8913, run by HPLC on instrument ID 78D
in the Liquid Chromatography lab on September 14th, 2024.”
With this level of built-in data lineage, every result is verifiable—no
guesswork or probabilistic answers involved.
AI Agent in Action
Lab worker: “Are there any regulatory updates that could impact this
workflow?”
AI agent: “There are proposed updates to 21 CFR Part11 that could lead to
changes in your electronic signature process. Would you like a summary?”
Agents can monitor regulatory shifts and highlight potential impacts,
helping labs stay ahead of compliance issues.
ABOUT LABVANTAGE SOLUTIONS
A recognized leader in enterprise laboratory software solutions, LabVantage Solutions dedicates itself to improving customer outcomes by
transforming data into knowledge. The LabVantage informatics platform is highly configurable, integrated across a common architecture, and 100%
browser-based to support hundreds of concurrent users. Deployed on-premise, via the cloud, or SaaS, it seamlessly interfaces with instruments and
other enterprise systems – enabling true digital transformation. The platform consists of the most modern laboratory information management
system (LIMS) available, integrated electronic laboratory notebook (ELN), laboratory execution system (LES), scientific data management system
(SDMS), and our advanced analytics solution (LabVantage Analytics); and for healthcare settings, a laboratory information system (LIS). We support
more than 1500 global customer sites in the life sciences, pharmaceutical, medical device, biobank, food & beverage, consumer packaged goods,
oil & gas, genetics/diagnostics, and healthcare industries. Headquartered in Somerset, NJ., with global offices, LabVantage has, for four decades,
offered its comprehensive portfolio of products and services to enable customers to innovate faster in the R&D cycle, improve manufactured
product quality, achieve accurate record-keeping, and comply with regulatory requirements. For more information, visit labvantage.com.
For more information, visit www.labvantageclinical.com.
©2025 LabVantage Solutions, Inc. All rights reserved. LabVantage is a registered trademark of LabVantage Solutions, Inc. Other product or service names mentioned herein are the trademarks of their respective owners. 2025-01
LabVantage Solutions, Inc.
265 Davidson Avenue, Suite 220
Somerset, NJ 08873
Phone: +1 (908) 707-4100
www.labvantage.com
Welcome to the Lab of the Future
By enabling contextual conversations with data, SaaS 2.0 marks a pivotal shift for lab
informatics. Lab workers will be able to collaborate directly with context-aware AI
agents to accelerate key decisions, shorten the pathway to breakthrough innovations,
and ensure compliance with a rapidly shifting regulatory environment.
This may be a big promise, but getting there doesn’t necessarily require a big leap.
It starts small: a missed test flagged just in time, a duplicate step avoided, a smarter
insight delivered exactly when it can make a difference. These everyday wins are the
foundation linking lab teams to their digital platform, enabling a more intelligent,
efficient, and future-ready Lab 4.0.
TO LEARN MORE ABOUT how our team can bring SaaS 2.0 to your lab,
contact us at info@labvantage.com or visit labvantage.com.
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